Showing posts with label Protein. Show all posts
Showing posts with label Protein. Show all posts

12/05/2015

Starvation sequence

In this post I'd like to describe the sequence of total stopping of any food intake, providing the water is still available, even if in minimal amounts. To understand the progression, it would be the best to name all the types of nutrients at the beginning, so the further explanation then makes perfect sense.  Three types of nutrients/energy are:
1. carbohydrates (or carbs)
2. fats (or lipids)
3. proteins
Because I couldn't find any flow diagram (anywhere), which would show this sequence of starvation, I was forced to improvise a little. So don't be discouraged by overt simplicity of this flow diagram. Still, (just in case) I want to clarify that symbols between the lines ( | and V ) are supposed to represent the down-pointing arrows. So let's get to it ! 

-----------------------------------------------------------------------------------------------

Fed state, or so-called postabsorptive state, meaning that
all three energy sources are available for usage
 |
V
after 4 hours - carbs are spent from liver and digestive tract, while
fats and proteins levels are still intact
 |
V
12 - 24 hours - carbs spent from whole body, with
slight increase in usage of fats and proteins
 |
V
2 - 4 days - using fats after converting them into ketone bodies (<100 times of normal level), plus
using proteins in the rate of 90g a day
 |
V
4 - 40 days - further using ketone bodies from fat (100-300 times more then in fed state), plus
decreasing usage of protein each day
 |
V
40 days - 2 months - maximum usage of ketone bodies ( >300 times comparing to normal level), with
usage of proteins in the rate of 20g a day
 |
V
2 - 3 months - Body still have some fat, and ketone bodies for energy, but once the body protein level drops to about half of normal level, the physical death will occur through the infection, because the immune system will fail to work efficiently.

---------------------------------------------------------------------------------------------------

Now, let's get through the whole process in slowly in the text format. After your meal, the body will be absorbing all nutrients, which is called the absorptive state. Once all the nutrients are absorbed, the next state is called post-absorptive state, signifying that the absorption is finished, and there is nothing else to digest.

Normally, those two state rotate, as with every other meal you get back into the absorptive state, and so on. But in the case, you stop eating and prolong the post-absorptive state, the first stage is called fasting. This is relatively still healthy state as you force your body to use all available (plus all excess) nutrients that are possibly accumulated in your digestive system.

Fasting changes into starvation roughly around 1-2 days after not eating any food. As I mentioned at the beginning, the water intake needs to be still available, otherwise without water, only 2-3 days will lead to dehydration, decrease of sodium levels, muscular spasm, and physical death. But that's the different story, so let's get back to our starvation sequence.

Roughly 4 hours after the end of the absorptive state and basically the beginning of post-absorptive state, all glucose in the form of glycogen in the liver is gone. That would represent about 25% of glycogen reserve in the body. The resting 75% in the skeletal muscles is then gone within 12-24 hours. This range differs with the amount of activity or rest. But basically after about 2 days of not eating, all the glycogen, and therefore the glucose in the body is gone/used.

To maintain the stable level of glucose in the blood, which is crucial for normal working of nervous system, the body converts fats into the middle-man called ketone bodies. This middle-man looks half the glucose and half amino acid, from which all the proteins are created. Glucose then feed the brain and nervous system, and amino acids are spent for protein synthesis, to save the built-in protein as much as possible.

In this state, the rate of protein usage is about 90g a day, plus with every other day after 2 days, this rate keep decreasing, finally stabilizing at the level of 20g a day in about 40 days. Meanwhile, the level of ketone bodies in the body increase about 100-300 fold. The state called the ketosis is a heavy burden for the organism, especially for the liver and kidneys, which have to take care of it.

Because ketone bodies are slightly toxic substances, they need to be eliminated from the system straight away after they are being used, and therefore, they can't be reused. Because the proteins in the blood, mainly in form of white blood cells incapacitate the toxins in ketone bodies, their level needs to be constantly updated, which is another load for protein usage.

Once the whole body protein level drops to about half, there will not be enough white blood cells for eliminating ketone bodies quickly enough. And at some point, (somewhere between 2 to 3 months), those ketones will overwhelm the immune system, and the result will the that the body will fall prey to the first virus, bacteria, or toxin which will attack the body, and will collapse.

Ironically, even in the time of death, the level of fats will be still at sufficient level to provide more ketone bodies, therefore the energy. But because of the lack of proteins, the immune system will be very frail and inefficient. So technically, the body will never run out of fat, or the energy until the end. It's the infection that will fire that fatal blow, which will result in physical death.

So I hope that this was simple and clear enough to understand the whole sequence. Of course, if at any point the new food intake is provided, the whole process will be postponed, and the cycle will start from beginning. Mainly if all three types of energy are present in fair amount of that particular meal.

11/12/2014

About central dogma in biology

Central dogma in biology dates back to 1958, when F. Crick proposed a theory that explained the flow of information within the organism. Moreover, it can be represented in the form of the flow diagram, as you can see right here in the picture, which I borrowed from the book Genetic engineering - dreams and nightmares. The information flow starts from nucleic acids, which are building rocks of DNA, our genetic code. That's all in the nucleus of basically every cell.
 
In there, DNA strand is split apart, and one strand leaves nucleus as messanger RNA, or mRNA. This molecule carries information about how to make various proteins needed for the body. So out of nucleus, and in the cytoplasm, mRNA is processesed and used for protein synthesis.
 
Protein synthesis comes in four structural steps called primary, secondary, tertiary, and quaternary structures. Primary structure consists of the chain of amino acids, and secondary is already building blocks like alpha-helixes or beta-pleated sheets. Those are then used in numerous combinations to create many different proteins. Those are then transported out of the cell into the place where it will be used for building or regenerating the new or existing tissue. And that's how the organism is built up.
 
 
DISCOVERY OF REVERSE TRANSCRIPTASE
-------------------------------------------------------------
 
Now we get to the point where this dogma becomes a dogma.This way of information flow was thought to be not revearsable, or simply put, it's only one-way street. But the scientific research and fast progress in genetic engineering proved that the opposite way is also possible. Study of retroviruses like Rous sarcoma virus, or bacteria like Escherichia coli (E. coli), showed that those micro-organisms contain an enzyme, which is able to create brand new DNA code. This enzyme is called reverse transcriptase.
 
In order to do this, it first creates so called complimentary DNA, or shortly cDNA. This is then compared with mRNA, because this serves as a template for reverse transcriptase. Here is where evolution and natural selection will play a part for a while, and the end/best result is then doubled and twisted by DNA polymerase - another enzyme. Well, and the new DNA is ready.
 
The research on viruses and bacteria has been proved to be very beneficial in many ways. For example many enzymes and hormones can be synthetically produced in laboratories using bacteria or viruses. This has been a huge relief from getting all those needed substances by natural ways, that is from people. Pharmacology experienced a big boom since, and is still evolving and developing, along with genetic engineering, as one of the leading research programs to date.